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Type:
Bug
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Resolution: Fixed
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Priority:
Normal
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Affects Version/s: 1.2
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Component/s: Plugins API
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None
Plugins do not run in a consistent (e.g. alphabetical) order - they currently run in the order files are presented to Picard by the o/s which is not necessarily alphabetical.
This can lead to inconsistent results on 2 PCs which are otherwise identical.
See forums for issue report.